2024年3月29日 星期五
基于 RAPD 标记的叉蕊薯蓣和粉背薯蓣不同居群遗传多样性研究
Study on genetic diversity of different populations of Dioscorea collettii and D. collettii var. hypoglauca based on RAPD marker
2010年 第19卷 第4期 页码[12-17]    下载全文[0.7MB]  
摘要

采用 RAPD 分子标记技术对 6 个叉蕊薯蓣(Dioscorea collettii Hook. f.)居群及 5 个粉背薯蓣[D. collettii var.hypoglauca (Palibin) C. T. Ting et al.]居群的遗传多样性进行了分析,并基于遗传相似系数采用 UPGMA 法对11 个居群进行了聚类分析。 用 14 个寡聚核苷酸引物共扩增出 170 条带,其中多态性条带 161 条,多态性条带百分率高达 94. 71% ; 粉背薯蓣 5 个居群多态性条带百分率的变化幅度(81. 25% ~ 89. 29% )略大于叉蕊薯蓣 6 个居群(82. 00% ~ 84. 21% )。 粉背薯蓣居群间的有效等位基因数( Ne)、Nei’ s 基因多样性指数( h)和 Shannon 多样性指数(I)分别为 1. 368 5、0. 238 4 和 0. 376 3,叉蕊薯蓣居群间的 Ne、h I 分别为 1. 331 1、0. 197 2 和 0. 298 3;叉蕊薯蓣与粉背薯蓣间的基因分化系数(Gst)为 0. 122 8,基因流(Nm)为 3. 570 7。 二者间的遗传相似系数为 0. 922 3, 遗传距离为 0. 080 9; 其中, 粉背薯蓣江西庐山居群和叉蕊薯蓣云南丽江居群间的遗传距离最远,达 0. 693 1;叉蕊薯蓣云南蒙自和云南景洪居群间的遗传距离最近,仅 0. 219 4。 根据聚类分析结果可将参试的 11 个居群分成 4 组,其中,所有的叉蕊薯蓣居群和粉背薯蓣浙江临安居群聚成第 1 组,粉背薯蓣重庆南川居群和湖南衡山居群聚为第 2组,粉背薯蓣湖南永顺居群和江西庐山居群则各自独立成组。 研究结果证明,叉蕊薯蓣和粉背薯蓣这 2 个类群之间为原变种和变种的关系,并存在着变种水平上的分化不完全。

 

Abstract

Genetic diversity of six populations of Dioscorea collettii Hook. f. and five populations of D.collettii var. hypoglauca ( Palibin) C. T. Ting et al. was studied by RAPD molecular marker, and cluster analysis of eleven populations was carried out by UPGMA method based on genetic similarity coefficient. The results show that 170 bands are amplified with fourteen oligonucleotide primers, in which there are 161 polymorphic bands with a percentage as high as 94. 71% . The change range of polymorphic band percentage of five populations of D. collettii var. hypoglauca (81. 25% -89. 29% ) is slightly higher than that of six populations of D. collettii (82. 00% -84. 21% ). The effective allele number ( Ne), Nei’ s gene diversity index (h) and Shannon’s diversity index (I) among D. collettii var. hypoglauca populations are 1. 368 5, 0. 238 4 and 0. 376 3, respectively, and those of D. collettii are 1. 331 1, 0. 197 2 and 0. 298 3, respectively. The gene differentiation coefficient (Gst) is 0. 122 8 and gene flow (Nm) is 3. 570 7 between D. collettii and D. collettii var. hypoglauca. The genetic similarity coefficient is 0. 922 3 and the genetic distance is 0. 080 9 between them, in which, the genetic distance between D. collettii var. hypolglauca population from Lushan of Jiangxi and D. collettii population from Lijiang of Yunnan is the farthest with a value of 0. 693 1, while that between D. collettii populations from Mengzi and Jinghong of Yunnan is the nearest with a value of 0. 219 4. According to cluster analysis result, the eleven populations can be divided into four groups. In which, all D. collettii populations and D. collettii var. hypoglauca population from Lin’ an of Zhejiang are clustered to the first group, D. collettii var. hypoglauca populations from Nanchuan of Chongqing and Hengshan of Hu’ nan are clustered to the second group, and D. collettii var. hypoglauca populations from Yongshun of Hu’ nan and Lushan of Jiangxi are respectively clustered to independently single groups. The results prove that the relationship of the two taxa is proto-variety and variety, but the incomplete differentiation in variant level still exists.

关键词叉蕊薯蓣; 粉背薯蓣; RAPD; 遗传多样性; 聚类分析
Key wordsDioscorea collettii Hook. f.; D. collettii var. hypoglauca ( Palibin) C. T. Ting et al.; RAPD; genetic diversity; cluster analysis
作者孙小芹, 郭建林, 周义锋, 彭斌, 白明明, 杭悦宇
所在单位江苏省• 中国科学院植物研究所(南京中山植物园) 江苏省植物迁地保护重点实验室, 江苏 南京 210014
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基金项目中国科学院大科学装置开放研究项目(2009-LSF-GBOWS-01)